BovineMine: Template query: Gene ID --> Variant Consequences

Gene ID Variant Consequences

Given a gene id, retrieve variants and their consequences.

Gene > Gene ID


	constrain to be saved Gene list

Consequence Type > Name

optional ON \| OFF ON \| OFF

web service URL

Perl | Python | Ruby | Java [help]

export XML

Questions? Comments? Concerns? Click Here!

Please cite:

Elsik CG, Unni DR, Diesh CM, Tayal A, Emery ML, Nguyen HN, Hagen DE. Bovine Genome Database: new tools for gleaning function from the Bos taurus genome. Nucleic Acids Res. 2016 Jan 4;44(D1):D834-9. doi: 10.1093/nar/gkv1077. Epub 2015 Oct 19. PubMed PMID: 26481361.

The Bovine Genome Database is supported by the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 613689, and has been supported by grants 2007-35616-17882 and 2010-65205-20407 from the USDA National Institute of Food and Agriculture. BGD is hosted at the University of Missouri.

If you have comments or if you wish to report a problem, please contact the Bovine Genome Database Administrator.

Your name:
Your email address:
Subject:
Message:	---- Current page: ---- /bovinemine/template.do;jsessionid=7FC106B51B1BE5764ADBE6CF0BE919C6?name=gene_id_to_variant_consequence&scope=all

3_PRIME_UTR_VARIANT
5_PRIME_UTR_VARIANT
CODING_SEQUENCE_VARIANT
DOWNSTREAM_GENE_VARIANT
FRAMESHIFT_VARIANT
INFRAME_DELETION
INFRAME_INSERTION
INTERGENIC_VARIANT
INTRON_VARIANT
MATURE_MIRNA_VARIANT
MISSENSE_VARIANT
NON_CODING_TRANSCRIPT_EXON_VARIANT
NON_CODING_TRANSCRIPT_VARIANT
PROTEIN_ALTERING_VARIANT
SPLICE_ACCEPTOR_VARIANT
SPLICE_DONOR_VARIANT
SPLICE_REGION_VARIANT
START_LOST
START_RETAINED_VARIANT
STOP_GAINED
STOP_LOST
STOP_RETAINED_VARIANT
SYNONYMOUS_VARIANT
UPSTREAM_GENE_VARIANT